{
  "_id": "6a229a1ccd65a98ecbd574eb",
  "Package": "PLIS",
  "Type": "Package",
  "Title": "Multiplicity Control using Pooled LIS Statistic",
  "Version": "1.2",
  "Date": "2022-10-01",
  "Author": "Zhi Wei & Wenguang Sun",
  "Maintainer": "Zhi Wei <zhiwei04@gmail.com>",
  "Description": "A multiple testing procedure for testing several groups of\nhypotheses is implemented. Linear dependency among the\nhypotheses within the same group is modeled by using hidden\nMarkov Models. It is noted that a smaller p value does not\nnecessarily imply more significance due to the dependency. A\ntypical application is to analyze genome wide association\nstudies datasets, where SNPs from the same chromosome are\ntreated as a group and exhibit strong linear genomic\ndependency. See Wei Z, Sun W, Wang K, Hakonarson H (2009)\n<doi:10.1093/bioinformatics/btp476> for more details.",
  "License": "GPL-3",
  "Packaged": {
    "Date": "2026-06-05 09:39:44 UTC",
    "User": "root"
  },
  "NeedsCompilation": "no",
  "Repository": "https://zweilab.r-universe.dev",
  "Date/Publication": "2022-10-02 14:40:02 UTC",
  "RemoteUrl": "https://github.com/cran/PLIS",
  "RemoteRef": "HEAD",
  "RemoteSha": "14b9887abe5ee41aca6f8486fc63fe9c14c5f23c",
  "MD5sum": "5e215edc8b708f4908e9196bce923d97",
  "_user": "zweilab",
  "_type": "src",
  "_file": "PLIS_1.2.tar.gz",
  "_fileid": "e6d9d07facc32f2276de5fc1756c372fa6e5c59ed9fe0cb488cf7f74919053da",
  "_filesize": 126238,
  "_sha256": "e6d9d07facc32f2276de5fc1756c372fa6e5c59ed9fe0cb488cf7f74919053da",
  "_created": "2026-06-05T09:39:44.000Z",
  "_published": "2026-06-05T09:42:52.361Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79702713256,
      "time": 97,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7433558452"
    },
    {
      "job": 79702713220,
      "time": 98,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7433559522"
    },
    {
      "job": 79702713233,
      "time": 145,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7433567361"
    },
    {
      "job": 79702713238,
      "time": 161,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7433568724"
    },
    {
      "job": 79702396747,
      "time": 127,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7433527754"
    },
    {
      "job": 79702713192,
      "time": 79,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7433553269"
    },
    {
      "job": 79702713264,
      "time": 67,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7433549177"
    },
    {
      "job": 79702713229,
      "time": 60,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7433546835"
    },
    {
      "job": 79702713239,
      "time": 70,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7433550772"
    }
  ],
  "_buildurl": "https://github.com/r-universe/zweilab/actions/runs/27007406506",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/PLIS",
  "_commit": {
    "id": "14b9887abe5ee41aca6f8486fc63fe9c14c5f23c",
    "author": "Zhi Wei <zhiwei04@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.2\n",
    "time": 1664721602
  },
  "_maintainer": {
    "name": "Zhi Wei",
    "email": "zhiwei04@gmail.com",
    "login": "zweilab",
    "description": "",
    "uuid": 171116450
  },
  "_registered": true,
  "_dependencies": [],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "zweilab",
      "count": 2,
      "uuid": 171116450
    }
  ],
  "_userbio": {
    "uuid": 171116450,
    "type": "user",
    "name": "ZWeiLab"
  },
  "_downloads": {
    "count": 129,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PLIS"
  },
  "_mentions": 1,
  "_searchresults": 2,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/PLIS.html",
    "manual.pdf"
  ],
  "_realowner": "zweilab",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2012-08-09"
    },
    {
      "version": "1.1",
      "date": "2012-08-11"
    },
    {
      "version": "1.2",
      "date": "2022-10-02"
    }
  ],
  "_exports": [
    "em.hmm",
    "plis"
  ],
  "_datasets": [
    {
      "name": "GWAS.SampleData",
      "title": "Sample GWAS Dataset",
      "object": "GWAS.SampleData",
      "file": "GWAS.SampleData.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "CHR",
        "SNP",
        "BP",
        "OR",
        "CHISQ",
        "P"
      ],
      "rows": 400,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "PLIS-package",
      "title": "PLIS",
      "topics": [
        "PLIS-package",
        "PLIS"
      ]
    },
    {
      "page": "bwfw.hmm",
      "title": "backward and forward inferences",
      "topics": [
        "bwfw.hmm"
      ]
    },
    {
      "page": "bwfw1.hmm",
      "title": "backward and forward inferences",
      "topics": [
        "bwfw1.hmm"
      ]
    },
    {
      "page": "em.hmm",
      "title": "EM algorithm for HMM to estimate LIS statistic",
      "topics": [
        "em.hmm"
      ]
    },
    {
      "page": "GWAS.SampleData",
      "title": "Sample GWAS Dataset",
      "topics": [
        "GWAS.SampleData"
      ]
    },
    {
      "page": "plis",
      "title": "A multiple testing procedure based on pooled LIS statistics",
      "topics": [
        "plis"
      ]
    }
  ],
  "_rundeps": [],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "plis",
  "_universes": [
    "zweilab"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2",
      "date": "2026-06-05T09:41:28.000Z",
      "distro": "noble",
      "commit": "14b9887abe5ee41aca6f8486fc63fe9c14c5f23c",
      "fileid": "5733991020e7e90771114b074065618c4ab99fbbceaf0ae3c63612dcf916c21f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zweilab/actions/runs/27007406506"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.2",
      "date": "2026-06-05T09:41:27.000Z",
      "distro": "noble",
      "commit": "14b9887abe5ee41aca6f8486fc63fe9c14c5f23c",
      "fileid": "b4e5df1cbc28bd01c33ba4baa4b0ab71b3ae8ebe8816f594e6151860e2b1adcf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zweilab/actions/runs/27007406506"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.2",
      "date": "2026-06-05T09:41:51.000Z",
      "commit": "14b9887abe5ee41aca6f8486fc63fe9c14c5f23c",
      "fileid": "c96953cdcd84bbc55d7994886984a23c5e8b1ae938e3215d738365d6cd20eb6b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zweilab/actions/runs/27007406506"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.2",
      "date": "2026-06-05T09:41:54.000Z",
      "commit": "14b9887abe5ee41aca6f8486fc63fe9c14c5f23c",
      "fileid": "b6f2a0661223a74a0006866ab53b92b00edd5e9ff7af7d642764446fdf540638",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zweilab/actions/runs/27007406506"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.2",
      "date": "2026-06-05T09:41:18.000Z",
      "commit": "14b9887abe5ee41aca6f8486fc63fe9c14c5f23c",
      "fileid": "1181a8e52b4f9091e0abf4668c6eb300993cca106a0d66c7bac7b850e4eeec29",
      "status": "success",
      "buildurl": "https://github.com/r-universe/zweilab/actions/runs/27007406506"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.2",
      "date": "2026-06-05T09:40:52.000Z",
      "commit": "14b9887abe5ee41aca6f8486fc63fe9c14c5f23c",
      "fileid": "89dd5e26b3a4bde2f35ceaef9a6b7270a6fe7908e5f64d959ca5235d38cfe3a9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zweilab/actions/runs/27007406506"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.2",
      "date": "2026-06-05T09:40:44.000Z",
      "commit": "14b9887abe5ee41aca6f8486fc63fe9c14c5f23c",
      "fileid": "c22ca16f48a395470cb2f3719adc0f027b833dd78ac0c8fc0968ac0ed1ca944f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zweilab/actions/runs/27007406506"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.2",
      "date": "2026-06-05T09:40:57.000Z",
      "commit": "14b9887abe5ee41aca6f8486fc63fe9c14c5f23c",
      "fileid": "daf9a27e718569fdf3521089010fab02e356040a5824b5d508399249dd91f506",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zweilab/actions/runs/27007406506"
    }
  ]
}